Bioinformatics Engineer

Responsibilities

• Design, develop, and optimize genomics workflows using Nextflow
• Build, deploy, and maintain pipelines for NGS data analysis (WGS, WES, RNA-Seq)
• Integrate workflows with cloud platforms and high-performance computing (HPC) environments
• Ensure reproducibility, scalability, and reliability of analytical pipelines
• Collaborate with bioinformatics, data science, and research teams
• Troubleshoot, debug, and optimize workflow execution
• Develop technical documentation and workflow best practices
• Implement quality control, validation, and version control standards

Requirements

• 3+ years of experience in bioinformatics or computational biology
• Strong hands-on experience with Nextflow
• Solid understanding of genomics and NGS data analysis methodologies
• Proficiency in Linux/Unix environments
• Scripting skills in Bash and/or Python
• Working knowledge of Git, GitHub, or GitLab
• Familiarity with Docker or Singularity
• Experience with cloud platforms (AWS, GCP, Azure) or HPC systems
• Experience managing large-scale genomic datasets
• Experience building interactive dashboards (R Shiny, Streamlit, React, etc.)

Preferred Qualifications

• Exposure to nf-core pipelines
• Knowledge of CWL or WDL
• Prior experience in clinical, regulated, or production genomics environments